Oh no...I got the 50 coins. Mon was in the gym for over 2 days. The only thing is it was a Snorlax that has the "shows up as a different team while in gym" bug as a valor even though I am instinct. Have no idea if that has anything to do with it.
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Are you talking about the middle column gym icon bug?
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I've heard the removed-gym part before, but not the no-coins part. Either way, if OP remembers what gym it was in, should go check that it is still there.
To answer the opening question: No both my pokemon that got kicked out this morning need revives.