Ok something is definitely up. My Snorlax, Gyardos, Rhydon, Alakazam, Jolteon, Tauros, Muk, Gengar, Jynx, Golem, Pinsir and Kingler all got significant increases.
I'm really sad though that my Slowbro I was working so hard to max out took a hit and is lower. Also lower is Hypno which I had at 1800+ and is now at 1684. That one really sucks. Nidoking and Golduck also took a hit. So much for my awesome Golduck. :(